Package: EGAnet 2.5.0

Hudson Golino

EGAnet: Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics

Implements the Exploratory Graph Analysis (EGA) framework for dimensionality and psychometric assessment. EGA estimates the number of dimensions in psychological data using network estimation methods and community detection algorithms. A bootstrap method is provided to assess the stability of dimensions and items. Fit is evaluated using the Entropy Fit family of indices. Unique Variable Analysis evaluates the extent to which items are locally dependent (or redundant). Network loadings provide similar information to factor loadings and can be used to compute network scores. A bootstrap and permutation approach are available to assess configural and metric invariance. Hierarchical structures can be detected using Hierarchical EGA. Time series and intensive longitudinal data can be analyzed using Dynamic EGA, supporting individual, group, and population level assessments.

Authors:Hudson Golino [aut, cre], Alexander Christensen [aut], Robert Moulder [ctb], Luis E. Garrido [ctb], Laura Jamison [ctb], Dingjing Shi [ctb], John Fox [cph, ctb], Yves Rosseel [cph, ctb], Alan Genz [cph, ctb], David Blackman [ctb], Sebastiano Vigna [ctb], John Burkardt [cph, ctb], Bill Venables [cph, ctb], Brian Ripley [cph, ctb], Pascal Deboeck [cph, ctb], Steve Boker [cph, ctb]

EGAnet_2.5.0.tar.gz
EGAnet_2.5.0.zip(r-4.7-x86_64)EGAnet_2.5.0.zip(r-4.7-arm64)EGAnet_2.5.0.zip(r-4.6-x86_64)EGAnet_2.5.0.zip(r-4.6-arm64)EGAnet_2.5.0.zip(r-4.5-x86_64)
EGAnet_2.5.0.tgz(r-4.6-x86_64)EGAnet_2.5.0.tgz(r-4.6-arm64)EGAnet_2.5.0.tgz(r-4.5-x86_64)EGAnet_2.5.0.tgz(r-4.5-arm64)
EGAnet_2.5.0.tar.gz(r-4.7-arm64)EGAnet_2.5.0.tar.gz(r-4.7-x86_64)EGAnet_2.5.0.tar.gz(r-4.6-arm64)EGAnet_2.5.0.tar.gz(r-4.6-x86_64)
EGAnet_2.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
EGAnet/json (API)

# Install 'EGAnet' in R:
install.packages('EGAnet', repos = c('https://hfgolino.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hfgolino/eganet/issues

Datasets:

On CRAN:

Conda:

9.40 score 65 stars 5 packages 273 scripts 4.3k downloads 10 mentions 60 exports 147 dependencies

Last updated from:c5be54fd03. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK166
linux-devel-x86_64OK192
source / vignettesOK259
linux-release-arm64OK145
linux-release-x86_64OK190
macos-release-arm64OK139
macos-release-x86_64OK281
macos-oldrel-arm64OK136
macos-oldrel-x86_64OK411
windows-devel-arm64OK242
windows-devel-x86_64OK196
windows-release-arm64OK238
windows-release-x86_64OK154
windows-oldrel-x86_64OK183
wasm-releaseOK156

Exports:auto.correlateboot.ergoInfobootEGACFAcolor_palette_EGAcommunity.comparecommunity.consensuscommunity.detectioncommunity.homogenizecommunity.prismcommunity.unidimensionalcompare.EGA.plotsconvert2igraphconvert2tidygraphcosinedimensionStabilitydynamic.network.comparedynEGAdynEGA.ind.popEBICglasso.qgraphEGAEGA.estimateEGA.fitEmbedentropyFitergoInfogenTEFIgllahierEGAigraph2matrixinfoClusterinformationinvarianceitemDiagnosticsitemStabilityjsdknown.graphLCTmodularitynet.loadsnet.scoresnetwork.comparenetwork.confusionnetwork.estimationnetwork.fitnetwork.predictabilityplot_clusterspolychoric.matrixriEGAsFsimDFMsimEGMtefitefi.compareTMFGtotalCortotalCorMatUVAvn.entropywto

Dependencies:abindbackportsbase64encbootbroombslibcachemcarcarDatacheckmatecliclueclustercodacodetoolscolorspacecorpcorcorrplotcowplotcpp11crayondata.tabledendextendDerivdigestdoBydplyrevaluatefarverfastmapfdrtoolfontawesomeforcatsforecastforeignFormulafracdifffsfuturefuture.applygenericsGGallyggplot2ggpubrggrepelggsciggsignifggstatsglassoglassoFastglobalsglueGPArotationgridExtragtablegtoolshighrHmischmshtmlTablehtmltoolshtmlwidgetsigraphisobandjpegjquerylibjsonliteknitrlabelinglatticelavaanlifecyclelistenvlme4lmtestmagrittrMASSMatrixMatrixModelsmemoisemgcvmimeminqamnormtmodelrnetworknlmenloptrnnetnumDerivparallellypatchworkpbapplypbivnormpbkrtestpillarpkgconfigplyrpngpolynomprettyunitsprogressprogressrpsychpurrrqgraphquadprogquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rlangrmarkdownrpartrstatixrstudioapiS7sassscalessemPlotsnaSparseMstatnet.commonstringistringrsurvivaltibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisviridisLitewithrxfunyamlzoo

Readme and manuals

Help Manual

Help pageTopics
EGAnet-packageEGAnet-package EGAnet
Automatic correlationsauto.correlate
Bootstrap Test for the Ergodicity Information Indexboot.ergoInfo
'bootEGA' Results of 'wmt2'Databoot.wmt
Bootstrap Exploratory Graph AnalysisbootEGA
CFA Fit of 'EGA' or 'hierEGA' StructureCFA
'EGA' Color Palettescolor_palette_EGA
Compares Community Detection Solutions Using Permutationcommunity.compare
Applies the Consensus Clustering Method (Louvain only)community.consensus
Apply a Community Detection Algorithmcommunity.detection
Homogenize Community Membershipscommunity.homogenize
Pairwise Resolution Iteration via Subgraph Modularity (PRISM)community.prism
Approaches to Detect Unidimensional Communitiescommunity.unidimensional
Visually Compare Two or More 'EGAnet' plotscompare.EGA.plots
Convert networks to 'igraph'convert2igraph
Convert networks to 'tidygraph'convert2tidygraph
Cosine similaritycosine
Depression Datadepression
Dimension Stability Statistics from 'bootEGA'dimensionStability
Loadings Comparison Test Deep Learning Neural Network Weightsdnn.weights
Compares Dynamic Network Structures Using Permutationdynamic.network.compare
Dynamic Exploratory Graph AnalysisdynEGA
Intra- and Inter-individual 'dynEGA'dynEGA.ind.pop
'EBICglasso' from 'qgraph' 1.4.4EBICglasso.qgraph
Exploratory Graph AnalysisEGA
Estimates 'EGA' for Multidimensional StructuresEGA.estimate
'EGA' Optimal Model Fit using the Total Entropy Fit Index ('tefi')EGA.fit
'EGA' Network of 'wmt2'Dataega.wmt
S3 Plot Methods for 'EGAnet'EGAnet-plot plot.EGAnet
Time-delay EmbeddingEmbed
Entropy Fit IndexentropyFit
Ergodicity Information IndexergoInfo
Generalized Total Entropy Fit Index using Von Neumman's entropy (Quantum Information Theory) for correlation matricesgenTEFI
Generalized Local Linear Approximationglla
Hierarchical 'EGA'hierEGA
Convert '' network to matrixigraph2matrix
Information Theoretic Mixture Clustering for 'dynEGA'infoCluster
Information Theory Metricsinformation
Intelligence DataintelligenceBattery
Measurement Invariance of 'EGA' Structureinvariance
Diagnostics Analysis for Low Stability ItemsitemDiagnostics
Item Stability Statistics from 'bootEGA'itemStability
Jensen-Shannon Distancejsd
Re-fit Networkknown.graph
Loadings Comparison TestLCT
Computes the (Signed) Modularity Statisticmodularity
Network Loadingsnet.loads
Network Scoresnet.scores
Compares Network Structures Using Permutationnetwork.compare
Confusion Matrix Metrics for Edge Comparison and Recoverynetwork.confusion
Apply a Network Estimation Methodnetwork.estimation
Traditional Fit Metrics for Networksnetwork.fit
Predict New Data based on Networknetwork.predictability
Optimism Dataoptimism
Plot Clustered Individual Networksplot_clusters
Computes Polychoric Correlationspolychoric.matrix
Prime Numbers through 100,000prime.num
Random-Intercept 'EGA'riEGA
sF Similarity MetricsF
sim.dynEGA Datasim.dynEGA
Simulate data following a Dynamic Factor ModelsimDFM
Simulate data following a Exploratory Graph Model ('EGM')simEGM
Total Entropy Fit Index using Von Neumman's entropy (Quantum Information Theory) for correlation matricestefi
Compare Total Entropy Fit Index ('tefi') Between Two Structurestefi.compare
Triangulated Maximally Filtered GraphTMFG
Total CorrelationtotalCor
Total Correlation MatrixtotalCorMat
Unique Variable AnalysisUVA
Entropy Fit Index using Von Neumman's entropy (Quantum Information Theory) for correlation matricesvn.entropy
WMT-2 Datawmt2
Weighted Topological Overlapwto